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1

[ACM Press the 6th international conference - Vancouver, British Columbia, Canada (2007.03.12-2007.03.16)] Proceedings of the 6th international conference on Aspect-oriented software development - AOSD '07 - Using natural language program analysis to locate and understand action-oriented concerns

Shepherd, David, Fry, Zachary P., Hill, Emily, Pollock, Lori, Vijay-Shanker, K.

Year:

2007

Language:

english

File:

PDF, 378 KB

english, 2007

2

Developing a biocuration workflow for AgBase, a non-model organism database

Pillai, L., Chouvarine, P., Tudor, C. O., Schmidt, C. J., Vijay-Shanker, K., McCarthy, F. M.

Journal:

Year:

2012

Language:

english

File:

PDF, 610 KB

english, 2012

3

Monotonic C-Command: A New Perspective on Tree Adjoining Grammar

Robert Frank, Seth Kulick, K. Vijay-Shanker

Journal:

Year:

2000

Language:

english

File:

PDF, 230 KB

english, 2000

4

Introducing natural language program analysis

L. Pollock, K. Vijay-shanker, D. Shepherd, E. Hill, Z. P. Fry, K. Maloor

Year:

2007

Language:

english

File:

PDF, 65 KB

english, 2007

5

A first-order axiomatization of the theory of finite trees

Rolf Backofen, James Rogers, K. Vijay-Shanker

Journal:

Journal of Logic, Language and Information

Year:

1995

Language:

english

File:

PDF, 2.22 MB

english, 1995

6

The equivalence of four extensions of context-free grammars

K. Vijay-Shanker, D. J. Weir

Journal:

Theory of Computing Systems

Year:

1994

Language:

english

File:

PDF, 1.49 MB

english, 1994

7

Primitive C-Command

Robert Frank, K. Vijay-Shanker

Journal:

Year:

2001

Language:

english

File:

PDF, 219 KB

english, 2001

8

[IEEE 2013 IEEE 21st International Conference on Program Comprehension (ICPC) - San Francisco, CA, USA (2013.05.20-2013.05.21)] 2013 21st International Conference on Program Comprehension (ICPC) - Automatic generation of natural language summaries for Java classes

Moreno, Laura, Aponte, Jairo, Sridhara, Giriprasad, Marcus, Andrian, Pollock, Lori, Vijay-Shanker, K.

Year:

2013

Language:

english

File:

PDF, 662 KB

english, 2013

9

DEXTER: Disease-Expression Relation Extraction from Text

Gupta, Samir, Dingerdissen, Hayley, Ross, Karen E, Hu, Yu, Wu, Cathy H, Mazumder, Raja, Vijay-Shanker, K

Journal:

Year:

2018

Language:

english

File:

PDF, 1.13 MB

english, 2018

10

iTextMine: integrated text-mining system for large-scale knowledge extraction from the literature

Ren, Jia, Li, Gang, Ross, Karen, Arighi, Cecilia, McGarvey, Peter, Rao, Shruti, Cowart, Julie, Madhavan, Subha, Vijay-Shanker, K, Wu, Cathy H

Journal:

Year:

2018

Language:

english

File:

PDF, 6.59 MB

english, 2018

11

[IEEE 2019 IEEE/ACM 16th International Conference on Mining Software Repositories (MSR) - Montreal, QC, Canada (2019.5.25-2019.5.31)] 2019 IEEE/ACM 16th International Conference on Mining Software Repositories (MSR) - Exploring Word Embedding Techniques to Improve Sentiment Analysis of Software Engineering Texts

Biswas, Eeshita, Vijay-Shanker, K., Pollock, Lori

Year:

2019

Language:

english

File:

PDF, 186 KB

english, 2019

12

From functional specification to syntactic structures: systemic grammar and tree adjoining grammar

Gijoo Yang, Kathleen F. McCoy, K. Vijay-Shanker

Journal:

Computational Intelligence

Year:

1991

Language:

english

File:

PDF, 1.39 MB

english, 1991

13

OBTAINING TREES FROM THEIR DESCRIPTIONS: AN APPLICATION TO TREE-ADJOINING GRAMMARS

James Rogers, K. VIJAY-SHANKER

Journal:

Computational Intelligence

Year:

1994

Language:

english

File:

PDF, 1.33 MB

english, 1994

14

AUTOMATICALLY GENERATING TREE ADJOINING GRAMMARS FROM ABSTRACT SPECIFICATIONS

Fei Xia, Martha Palmer, K. Vijay-Shanker

Journal:

Computational Intelligence

Year:

2005

Language:

english

File:

PDF, 504 KB

english, 2005

15

SORTAL ANAPHORA RESOLUTION IN MEDLINE ABSTRACTS

Manabu Torii, K. Vijay-Shanker

Journal:

Computational Intelligence

Year:

2007

Language:

english

File:

PDF, 472 KB

english, 2007

16

Using name-internal and contextual features to classify biological terms

Manabu Torii, Sachin Kamboj, K. Vijay-Shanker

Journal:

Journal of Biomedical Informatics

Year:

2004

Language:

english

File:

PDF, 392 KB

english, 2004

17

Analysing source code: looking for useful verb-direct object pairs in all the right places

Fry, Z.P., Shepherd, D., Hill, E., Pollock, L., Vijay-Shanker, K.

Journal:

Year:

2008

Language:

english

File:

PDF, 200 KB

english, 2008

18

eGIFT: Mining Gene Information from the Literature

Catalina O Tudor, Carl J Schmidt, K Vijay-Shanker

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 677 KB

english, 2010

19

[Association for Computational Linguistics the 28th annual meeting - Pittsburgh, Pennsylvania (1990.06.06-1990.06.09)] Proceedings of the 28th annual meeting on Association for Computational Linguistics - - Deterministic left to right parsing of Tree Adjoining Languages

Schabes, Yves, Vijay-Shanker, K.

Year:

1990

Language:

english

File:

PDF, 398 KB

english, 1990

20

[IEEE 2012 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Philadelphia, PA, USA (2012.10.4-2012.10.7)] 2012 IEEE International Conference on Bioinformatics and Biomedicine - iSimp: A sentence simplification system for biomedicail text

Peng, Yifan, Tudor, Catalina O., Torii, Manabu, Wu, Cathy H., Vijay-Shanker, K.

Year:

2012

Language:

english

File:

PDF, 668 KB

english, 2012

21

[ACM Press the IEEE/ACM international conference - Antwerp, Belgium (2010.09.20-2010.09.24)] Proceedings of the IEEE/ACM international conference on Automated software engineering - ASE '10 - Towards automatically generating summary comments for Java methods

Sridhara, Giriprasad, Hill, Emily, Muppaneni, Divya, Pollock, Lori, Vijay-Shanker, K.

Year:

2010

Language:

english

File:

PDF, 497 KB

english, 2010

22

A framework for biomedical figure segmentation towards image-based document retrieval

Lopez, Luis D, Yu, Jingyi, Arighi, Cecilia, Tudor, Catalina O, Torii, Manabu, Huang, Hongzhan, Vijay-Shanker, K, Wu, Cathy

Journal:

BMC Systems Biology

Year:

2013

Language:

english

File:

PDF, 2.49 MB

english, 2013

23

An empirical study of identifier splitting techniques

Hill, Emily, Binkley, David, Lawrie, Dawn, Pollock, Lori, Vijay-Shanker, K.

Journal:

Empirical Software Engineering

Year:

2014

Language:

english

File:

PDF, 806 KB

english, 2014

24

[IEEE 2011 IEEE 19th International Conference on Program Comprehension (ICPC) - Kingston, ON, Canada (2011.06.22-2011.06.24)] 2011 IEEE 19th International Conference on Program Comprehension - Generating Parameter Comments and Integrating with Method Summaries

Sridhara, Giriprasad, Pollock, Lori, Vijay-Shanker, K.

Year:

2011

Language:

english

File:

PDF, 924 KB

english, 2011

25

[IEEE 2011 26th IEEE/ACM International Conference on Automated Software Engineering (ASE) - Lawrence, KS, USA (2011.11.6-2011.11.10)] 2011 26th IEEE/ACM International Conference on Automated Software Engineering (ASE 2011) - Improving source code search with natural language phrasal representations of method signatures

Hill, Emily, Pollock, Lori, Vijay-Shanker, K.

Year:

2011

Language:

english

File:

PDF, 224 KB

english, 2011

26

[IEEE 2009 IEEE 31st International Conference on Software Engineering - Vancouver, BC, Canada (2009.05.16-2009.05.24)] 2009 IEEE 31st International Conference on Software Engineering - Automatically capturing source code context of NL-queries for software maintenance and reuse

Hill, Emily, Pollock, Lori, Vijay-Shanker, K.

Year:

2009

Language:

english

File:

PDF, 766 KB

english, 2009

27

[IEEE 2011 18th Working Conference on Reverse Engineering (WCRE) - Limerick, Ireland (2011.10.17-2011.10.20)] 2011 18th Working Conference on Reverse Engineering - Automatic Segmentation of Method Code into Meaningful Blocks to Improve Readability

Wang, Xiaoran, Pollock, Lori, Vijay-Shanker, K.

Year:

2011

Language:

english

File:

PDF, 255 KB

english, 2011

28

Predicting Interacting Residues Using Long-Distance Information and Novel Decoding in Hidden Markov Models

Kern, Colin, Gonzalez, Alvaro J., Li Liao,, Vijay-Shanker, K.

Journal:

IEEE Transactions on NanoBioscience

Year:

2013

Language:

english

File:

PDF, 864 KB

english, 2013

29

[IEEE 2009 6th IEEE International Working Conference on Mining Software Repositories (MSR) - Vancouver, BC, Canada (2009.05.16-2009.05.17)] 2009 6th IEEE International Working Conference on Mining Software Repositories - Mining source code to automatically split identifiers for software analysis

Enslen, Eric, Hill, Emily, Pollock, Lori, Vijay-Shanker, K.

Year:

2009

Language:

english

File:

PDF, 235 KB

english, 2009

30

[IEEE 2012 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Philadelphia, PA, USA (2012.10.4-2012.10.7)] 2012 IEEE International Conference on Bioinformatics and Biomedicine - Robust segmentation of biomedical figures for image-based document retrieval

Lopez, Luis D., Yu, Jingyi, Tudor, Catalina O., Arighi, Cecilia N., Huang, Hongzhan, Vijay-Shanker, K., Wu, Cathy H.

Year:

2012

Language:

english

File:

PDF, 2.96 MB

english, 2012

31

[IEEE 2013 IEEE 21st International Conference on Program Comprehension (ICPC) - San Francisco, CA, USA (2013.05.20-2013.05.21)] 2013 21st International Conference on Program Comprehension (ICPC) - Part-of-speech tagging of program identifiers for improved text-based software engineering tools

Gupta, Samir, Malik, Sana, Pollock, Lori, Vijay-Shanker, K.

Year:

2013

Language:

english

File:

PDF, 219 KB

english, 2013

32

[IEEE 2009 IEEE International Conference on Bioinformatics and Biomedicine Workshop, BIBMW - Washington, DC, USA (2009.11.1-2009.11.4)] 2009 IEEE International Conference on Bioinformatics and Biomedicine Workshop - Mining gene-related information from biomedical literature

Tudor, Catalina O, Vijay-Shanker, K, Schmidt, Carl J

Year:

2009

Language:

english

File:

PDF, 50 KB

english, 2009

33

[IEEE 2013 IEEE 21st International Conference on Program Comprehension (ICPC) - San Francisco, CA, USA (2013.05.20-2013.05.21)] 2013 21st International Conference on Program Comprehension (ICPC) - JSummarizer: An automatic generator of natural language summaries for Java classes

Moreno, Laura, Marcus, Andrian, Pollock, Lori, Vijay-Shanker, K.

Year:

2013

Language:

english

File:

PDF, 1.58 MB

english, 2013

34

[IEEE 2012 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Philadelphia, PA, USA (2012.10.4-2012.10.7)] 2012 IEEE International Conference on Bioinformatics and Biomedicine - Improving interacting residue prediction using long-distance information in hidden Markov models

Kern, Colin, Gonzalez, Alvaro J., Liao, Li, Vijay-Shanker, K.

Year:

2012

Language:

english

File:

PDF, 692 KB

english, 2012

35

[IEEE 2008 IEEE 16th International Conference on Program Comprehension - Amsterdam (2008.06.10-2008.06.13)] 2008 16th IEEE International Conference on Program Comprehension - Identifying Word Relations in Software: A Comparative Study of Semantic Similarity Tools

Sridhara, G., Hill, E., Pollock, L., Vijay-Shanker, K.

Year:

2008

Language:

english

File:

PDF, 391 KB

english, 2008

36

[IEEE 2013 10th IEEE Working Conference on Mining Software Repositories (MSR 2013) - San Francisco, CA, USA (2013.05.18-2013.05.19)] 2013 10th Working Conference on Mining Software Repositories (MSR) - Automatically mining software-based, semantically-similar words from comment-code mappings

Howard, Matthew J., Gupta, Samir, Pollock, Lori, Vijay-Shanker, K.

Year:

2013

Language:

english

File:

PDF, 221 KB

english, 2013

37

Automatic Segmentation of Method Code into Meaningful Blocks: Design and Evaluation

Wang, Xiaoran, Pollock, Lori, Vijay-Shanker, K.

Journal:

Journal of Software Evolution and Process

Year:

2014

Language:

english

File:

PDF, 3.75 MB

english, 2014

38

[IEEE 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW) - Philadelphia, USA (2012.10.4-2012.10.7)] 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops - Pathway curation: Application of text-mining tools eGIFT and RLIMS-P

Schmidt, Carl J, Sun, Liang, Arighi, Cecilia N., Decker, Keith, Vijay-Shanker, K., Torii, Manabu, Tudor, Catalina O., Wu, Cathy, D'Eustachio, Peter

Year:

2012

Language:

english

File:

PDF, 661 KB

english, 2012

39

[IEEE 2013 IEEE International Conference on Software Maintenance (ICSM) - Eindhoven, Netherlands (2013.09.22-2013.09.28)] 2013 IEEE International Conference on Software Maintenance - Differentiating Roles of Program Elements in Action-Oriented Concerns

Hill, Emily, Shepherd, David, Pollock, Lori, Vijay-Shanker, K.

Year:

2013

Language:

english

File:

PDF, 337 KB

english, 2013

40

[IEEE 2013 10th IEEE Working Conference on Mining Software Repositories (MSR 2013) - San Francisco, CA, USA (2013.05.18-2013.05.19)] 2013 10th Working Conference on Mining Software Repositories (MSR) - A dataset for evaluating identifier splitters

Binkley, Dave, Lawrie, Dawn, Pollock, Lori, Hill, Emily, Vijay-Shanker, K.

Year:

2013

Language:

english

File:

PDF, 165 KB

english, 2013

41

Randomized rule selection in transformation-based learning: a comparative study

CARBERRY, SANDRA, VIJAY-SHANKER, K., WILSON, ANDREW, SAMUEL, KEN

Journal:

Natural Language Engineering

Year:

2001

Language:

english

File:

PDF, 372 KB

english, 2001

42

Automated extraction of Tree-Adjoining Grammars from treebanks

CHEN, JOHN, BANGALORE, SRINIVAS, VIJAY-SHANKER, K.

Journal:

Natural Language Engineering

Year:

2006

Language:

english

File:

PDF, 496 KB

english, 2006

43

The eFIP system for text mining of protein interaction networks of phosphorylated proteins

Tudor, C. O., Arighi, C. N., Wang, Q., Wu, C. H., Vijay-Shanker, K.

Journal:

Year:

2012

Language:

english

File:

PDF, 814 KB

english, 2012

44

A generalizable NLP framework for fast development of pattern-based biomedical relation extraction systems

Peng, Yifan, Torii, Manabu, Wu, Cathy H, Vijay-Shanker, K

Journal:

BMC Bioinformatics

Year:

2014

Language:

english

File:

PDF, 752 KB

english, 2014

45

RLIMS-P: an online text-mining tool for literature-based extraction of protein phosphorylation information

Torii, M., Li, G., Li, Z., Oughtred, R., Diella, F., Celen, I., Arighi, C. N., Huang, H., Vijay-Shanker, K., Wu, C. H.

Journal:

Year:

2014

Language:

english

File:

PDF, 859 KB

english, 2014

46

Beyond the clause: extraction of phosphorylation information from medline abstracts

Narayanaswamy, M., Ravikumar, K. E., Vijay-Shanker, K.

Journal:

Year:

2005

Language:

english

File:

PDF, 83 KB

english, 2005

47

Literature mining and database annotation of protein phosphorylation using a rule-based system

Hu, Z. Z., Narayanaswamy, M., Ravikumar, K. E., Vijay-Shanker, K., Wu, C. H.

Journal:

Year:

2005

Language:

english

File:

PDF, 313 KB

english, 2005

48

[ACM Press the 5th international conference - Bonn, Germany (2006.03.20-2006.03.24)] Proceedings of the 5th international conference on Aspect-oriented software development - AOSD '06 - Towards supporting on-demand virtual remodularization using program graphs

Shepherd, David, Pollock, Lori, Vijay-Shanker, K.

Year:

2006

Language:

english

File:

PDF, 626 KB

english, 2006

49

[ACM Press Proceeding of the 3rd international workshop - Waikiki, Honolulu, HI, USA (2011.05.28-2011.05.28)] Proceeding of the 3rd international workshop on Search-driven development: users, infrastructure, tools, and evaluation - SUITE '11 - Investigating how to effectively combine static concern location techniques

Hill, Emily, Pollock, Lori, Vijay-Shanker, K.

Year:

2011

Language:

english

File:

PDF, 231 KB

english, 2011

50

[ACM Press the International Conference - Wshington DC, USA (2013.09.22-2013.09.25)] Proceedings of the International Conference on Bioinformatics, Computational Biology and Biomedical Informatics - BCB'13 - Text Mining of Protein Phosphorylation Information Using a Generalizable Rule-Based Approach

Torii, Manabu, Arighi, Cecilia N., Wang, Qinghua, Wu, Cathy H., Vijay-Shanker, K.

Year:

2007

Language:

english

File:

PDF, 335 KB

english, 2007

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